Fixed crash of detailed mapping report tool with certain data sets.Fixed problem that caused a crash with extract consensus sequence tool with certain parameter configurations and with read mappings with no reads.Fixed various stability and performance problems of Maximum likelihood phylogeny.Improved stability of Probabilistic variant detection on huge data sets.Previously, they were treated as unique reads. In BAM files created by BWA, non-specific reads are now recognized as such during import.If you are using the tool with annotations spanning across the starting point of a circular reference, we recommend re-running the analysis. Fixed: The Target Regions Statistics tool did not handle annotations covering the starting point of circular reference sequences properly.Fixed: Opening a search view for searching sequences at NCBI would sometimes fail.Fixed various problems related to launching the Workbench through Java Webstart.Any existing settings will be copied to the new location automatically. The folder used by the Workbench for storing log and settings files on Windows 8 has been updated to follow conventions for Windows 8 which is identical to Windows 7.Fixed a problem in track lists that caused the view to crash when there is an insertion at the very end of a chromosome.
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